PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_16395_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 312aa    MW: 34521.2 Da    PI: 8.3092
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_16395_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.15.6e-69862462153
                      DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...... 78 
                                 r+g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++++++++++++++      
  Cotton_A_16395_BGI-A2_v1.0  86 RQGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQTQQQQQQQQNQQQEHQQlfrgdn 168
                                 7899*****************************************************99999888866665555555577777 PP

                      DUF702  79 .....kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                       ++ + +l++t+ls ++  + le  ++P+evss+avfrcv+vs++dd e e+aYqtav+i+GhvfkGiLyd+G+e
  Cotton_A_16395_BGI-A2_v1.0 169 pkrqrDNHGSPSLACTRLSPTT--SGLELGQFPPEVSSPAVFRCVKVSAMDDVEGEFAYQTAVNIAGHVFKGILYDRGPE 246
                                 7663223344455566655554..5688899***********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.9E-6689246IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.8E-2791133IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.0E-25197245IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAGFFYLGGR EGAASSKQEG EDKEENLYFY RNEEIYNKGF EIWPQYYYQQ QNVNNLSFGA  60
GPSRRTTGFN LSDESSSRSA GFTVMRQGGM NCQDCGNQAK KDCAHLRCRT CCKSRGFQCQ  120
THVKSTWVPA AKRRERQQQL AALQQTQQQQ QQQQNQQQEH QQLFRGDNPK RQRDNHGSPS  180
LACTRLSPTT SGLELGQFPP EVSSPAVFRC VKVSAMDDVE GEFAYQTAVN IAGHVFKGIL  240
YDRGPEIRYT SGGESSQQLN LITTASTTAA AATTTTAATS SNPGTSMIDP SLYPAPLNAF  300
IAGTQFFPPP RS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3942635e-85GQ394263.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1228 SSR marker CGR6822 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448074.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ51e-102SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A0D2S4J40.0A0A0D2S4J4_G
STRINGPOPTR_0002s03000.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-86SHI-related sequence 5